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Genetics and Genomics

Full List of References

Refereed – research papers:

  1. Kapetanovic, R., Fairbairn, L., Beraldi, D., Sester, D.P., Archibald, A.L., Tuggle, C.K. & Hume, D.A. (2012). Pig Bone Marrow-Derived Macrophages Resemble Human Macrophages in Their Response to Bacterial Lipopolysaccharide. Journal of Immunology, 188(7), 3382-3394. dx.doi.org/10.4049/jimmunol.1102649
  2. Thomson, A.J., Pierart, H., Meek, S., Bogerman, A., Sutherland, L., Murray, H., Mountjoy, E., Downing, A., Talbot, R., Sartori, C., Whitelaw, C.B., Freeman, T.C., Archibald, A.L. & Burdon, T. (2012). Reprogramming Pig Fetal Fibroblasts Reveals a Functional LIF Signaling Pathway. Cellular Reprogramming, 14(2), 112-122 http://online.liebertpub.com/doi/abs/10.1089/cell.2011.0078
  3. Hume, D.A., Whitelaw, C.B.A. and Archibald, A.L., (2011). The future of animal production – improving productivity and sustainability. The Journal of Agricultural Science 149, 9-16. dx.doi.org/10.1017/S0021859610001188
  4. Wilkinson, S., Wiener, P., Archibald, A.L., Law, A., Schnabel, R.D., Taylor, J.F., McKay, S.D. and Ogden, R., (2011). Evaluation of approaches for identifying population informative markers from high density SNP Chips. BMC Genetics 12, 45. www.biomedcentral.com/1471-2156/12/45
  5. Jacobsen, M., Cirera, S., Joller, D., Esteso, G., Kracht, S. S., Edfors, I., Bendixen, C., Archibald, A. L., Vogeli, P., Neuenschwander, S., Bertschinger, H. U., Rampoldi, A, Andersson, L., Fredholm, M., Jorgensen, C. B. (2011). Characterisation of five candidate genes within the ETEC F4ab/ac candidate region in pigs. BMC Research Notes 4: 225. www.biomedcentral.com/1756-0500/4/225
  6. Ait-Ali, T., Wilson, A.D., Carre, W., Westcott, D.G., Frossard, J.-P., Mellencamp, M.A., Mouzaki, D., Matika, O., Waddington, D., Drew, T.W., Bishop, S.C. and Archibald, A.L., (2011) Host inhibits replication of European porcine reproductive and respiratory syndrome virus in macrophages by altering differential regulation of type-I interferon transcriptional response. Immunogenetics 63: 437-448
  7. Broke, A., Matika, O., Wilson, A.D., Anderson, J., Morin, A.-C., Finlayson, H.A., Reiner, G., Willems, H., Bishop, S.C., Archibald, A.L. and Ait-Ali, T., (2011) An intronic polymorphism in the porcine IRF7 gene is associated with better health and immunity of the host during Sarcocystis infection and affects interferon signaling.  Animal Genetics 42: 386-394
  8. Knight, P. A., Griffith, S. E., Pemberton, A. D., Pate, J. M., Guarneri, L., Anderson, K., Talbot, R. T., Smith, S., Waddington, D., Fell, M., Archibald, A. L., Burgess, S. T., Smith, W. D., Miller, H. R., Morrison, W. I. (2011). Novel gene expression responses in the ovine abomasal mucosa to infection with the gastric nematode Teladorsagia circumcincta. Veterinary Research 42:78. www.veterinaryresearch.org/content/42/1/78
  9. Noyes, H., Brass, A., Obara, I., Anderson, S., Archibald, A. L. et al. (2011). Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection  Proceedings of the National Academy of Sciences of the United States of America. 108: 9309 www.pnas.org/content/108/22/9304.long
  10. Wei, W-H., Skinner, T.M., Anderson, J.A., Southwood, O.I., Plastow, G.S., Archibald, A.L. and Haley, C.S., in press. Mapping QTL in the porcine MHC region affecting fatness and growth traits in a Meishan/Large White composite population. Animal Genetics 42: 83-85 DOI: dx.doi.org/10.1111/j.1365-2052.2010.02062.x
  11. Rampoldi, A., Jacobsen, M.J., Bertschinger, H.U., Joller, D., Bürgi, E., Vögeli, P., Andersson, L., Archibald, A.L., Fredholm, M., Jørgensen, C.B. and Neuenschwander, S., 2011. The receptor locus for Escherichia coli F4ab/F4ac in the pig maps distal to the MUC4 – LMLN region. Mammalian Genome 22: 122-129.
  12. Goodhead, I., Archibald A., Amwayi, P., Brass, A., Gibson, J., Hall, N., Hughes, M.A., Limo, M., Iraqi, F., Kemp, S.J. and Noyes, H.A., 2010. A comprehensive genetic analysis of candidate genes regulating response to Trypanosoma congolense infection in mice. PLoS Neglected Tropical Diseases 4, e880.
  13. Lewis, C.R.G., Ait-Ali, T., Wilson, A., Westcott, D.G., Frossard, J.-P., Naidu, B., Mellencamp, M.A., Torremorell, M., Drew, T., Bishop, S.C. and Archibald, A.L., 2010. Effects of porcine reproductive and respiratory syndrome virus infection on the performance of pregnant gilts and growing pigs. Animal Production Science 50, 890-896.
  14. Archibald, A.L., Bolund, L., Churcher, C., Fredholm, M., Groenen, M.A.M., Harlizius, B., Lee, K.-T., Milan, D., Rogers, J., Rothschild, M.F., Uenishi, H., Wang, J. and Schook, L.B. for the Swine Genome Sequencing Consortium, 2010. Pig genome sequence – analysis and publication strategy. BMC Genomics 11: 438.  www.biomedcentral.com/1471-2164/11/438
  15. The International Sheep Genomics Consortium, Archibald, A.L., Cockett, N.E., Dalrymple, B.P., Faraut, T., Kijas, J.W., Maddox, J.F., McEwan, J.C., Oddy, V.H., Raadsma, H.W., Wade, C., Wang, L., Wang, W. and Xun, X., 2010. The sheep genome reference sequence: a work in progress. Animal Genetics 41, 441-453. onlinelibrary.wiley.com/doi/10.1111/j.1365-2052.2010.02100.x/abstract
  16. Noyes, H.A., Agaba, M., Anderson, S., Archibald, A.L., Brass, A., Gibson, J., Hall, L., Hulme, H., Oh, S.-J. and Kemp, S., 2010. Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background. BMC Genomics 11:361. www.biomedcentral.com/1471-2164/11/361
  17. George, S., Ponnachan, P.T.C. and Archibald, A.L., 2010. Identifcation of genetic variation at murine casein loci by RFLP. Indian Journal of Biotechnology 9, 131-136.
  18. Jacobsen, M., Kracht, S.S., Tornero, G.E., Cirera, S., Edfors, I., Archibald, A.L., Bendixen, C., Andersson, L., Fredholm M. and Jørgensen, C.B., 2010. Refined candidate region specified by haplotype sharing for Escherichia coli F4ab/F4ac susceptibility in pigs. Animal Genetics 41, 21-25
  19. Ramos, A.M., Crooijmans, R.P.M.A., Affara, N.A., Amaral, A.J., Archibald, A.L., Beever, J.E., Bendixen, C., Churcher, C., Clark, R., Dehais, P., Hansen, M.S., Hedegaard, J., Hu, Z.-L., Kerstens, H.H., Law, A.S., Megens, H.J., Milan, D., Nonneman, D.J., Rohrer, G.A., Rothschild, M.F., Smith, T.P.L., Schnabel, R.D., Van Tassell, C.P., Taylor, J.F., Wiedmann, R.T., Schook, L.B. and Groenen, M.A.M., 2009. Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS ONE 4 (8): e6524. www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0006524
  20. Joller, D., Jørgensen, C.B., Bertschinger, H.U., Python, P., Edfors, I., Cirera, S., Archibald, A.L., Bürgi, E., Karlskov-Mortensen, P., Andersson, L., Fredholm, M. and Vögeli, P., 2009. Refined localization of the Escherichia coli F4ab/F4ac receptor locus on pig chromosome 13. Animal Genetics 40, 749-752
  21. Ait-Ali, T., Wilson, A.W., Finlayson, H., Carré, W., Ramaiahgari, S.C., Westcott, D.G., Waterfall, M., Frossard, J.-P., Baek, K.-H., Drew, T.W., Bishop, S.C. and Archibald, A.L., 2009. Functional analysis of the porcine USP18 and its role during porcine arterivirus replication. Gene 439, 35-42.
  22. Jann, O.C., King, A., Lopez_Corrales, N., Anderson, S.I., Jensen, K., Ait-Ali, T., Tang, H., Wu, C., Cockett, N.E., Archibald, A.L. and Glass, E.J., 2009. Comparative genomics of Toll-like receptor signalling in five species. BMC Genomics 10, 216 doi:10.1186/1471-2164-10-216. www.biomedcentral.com/1471-2164/10/216
  23. Guo, Y.-M., Lee, G.J., Archibald, A.L. and Haley, C.S., 2008. Quantitative trait loci for production traits in pigs: A combined analysis of two Meishan x Large White populations. Animal Genetics 39, 486-495.
  24. Hadjiconstantouras, C., Sargent, C.A., Skinner, T.M., Archibald, A.L., Haley, C.S. and Plastow, G.S., 2008. Characterization of the porcine KIT ligand gene: expression analysis, genomic structure, polymorphism detection and association with coat colour traits. Animal Genetics 39, 217-224.
  25. Nelson, L., Anderson, S.I., Archibald, A.L., Rhind, S., Lu, Z.H., Condie, A., McIntyre, N., Thompson, J., Nenutil, R., Vojtesek, B., Whitelaw, C.B.A., Little, T.J. and Hupp, T., 2008. An animal model to evaluate the function and regulation of the adaptively evolving stress protein SEP53 in oesophageal bile damage responses. Cell Stress and Chaperones 13, 375-385. DOI 10.1007/s12192000800037-1
  26. Houston, R.D., Rance, K.A., Sutcliffe, E., Archibald, A.L. and Haley, C.S., 2008. The chloecystokinin type A receptor g.179A>G polymorphism affects feeding rate. Animal Genetics 39, 187-188.
  27. D’Andrea, S., Pilla, F., Giuffra, E., Waddington, D., and Archibald, A.L., 2008. Structural analysis and haplotype diversity in swine LEP and MC4R genes. Journal of Animal Breeding and Genetics 125, 130-136,
  28. Humphray, S.J., Scott, C.E., Clark, R., Marron, B., Plumb, R., Bender, C., Camm, N., Davis, J., Jenks, A., Noon, A., Patel, M., Sehra, H., Yang, F., Rogatcheva, M.B., Milan, D., Chardon, P., Rohrer, G., Nonneman, D., de Jong, P., Meyers, S.N., Archibald, A., Beever, J.E,, Schook, L.B. and Rogers, J., 2007 A high utility integrated map of the pig genome. Genome Biology 8:R139doi:10.1186/gb-2007-8-7-r139 genomebiology.com/2007/8/7/R139
  29. Wei, W.H., de Koning, D.-J., Penman, J.C., Finlayson, H.A., Archibald, A.L. and Haley, C.S., 2007. QTLs modulating ear size and aspect in pigs. Animal Genetics 38, 222-226.
  30. Ait-Ali, T., Wilson, A.D., Westcott, D.G., Clapperton, M., Waterfall, M., Mellencamp, M.A., Drew, T.W., Bishop, S.C. and Archibald, A.L., 2007. Innate immune responses to replication of porcine reproductive and respiratory syndrome virus in swine alveolar macrophages. Viral Immmunology 20, 105-118.
  31. Houston, R.D., Haley, C.S., Archibald, A.L., Cameron, N.D., Plastow, G.S. and Rance, K.A., 2006. A polymorphism in the 5' untranslated region of the porcine cholecystokinin type-A receptor (CCAKR) gene affects feed intake and growth. Genetics 174 (3) 1555-1563[dx.doi.org/10.1534/genetics.106.059659]
  32. Zhang, F., Hopwood, P., Abrams, C.C., Downing, A., Murray, F., Talbot, R., Archibald, A., Lowden, S. and Dixon, L.K., 2006. Macrophage transcriptional responses following in vitro infection with a highly virulent African Swine Fever Virus isolate. Journal of Virology 80, 10514-10521.
  33. Skinner, T.M., Anderson, J.A., Haley, C.S. and Archibald, A.L., 2006. Assessment of SULT1A1, CYP2A6 and CYP2C18 as candidate genes for elevated backfat skatole levels in commercial and experimental pig populations. Animal Genetics 37, 521-522.
  34. Sambrook, J.G., Sehra, H., Coggill, P., Humphray, S., Palmer, S., Sims, S., Takamatsu, H.-H., Wileman, T., Archibald, A.L. and Beck, S., 2006. Identification of a single Killer Immunoglobulin-like Receptor (KIR) gene in the porcine Leukocyte Receptor Complex on chromosome 6q. Immunogenetics 58, 481-486.
  35. SanCristobal, M., Chevalet, C., Peleman, J., Heuven, H., Brugmans, B., van Schriek, M., Joosten, R., Rattink, A.P., Harlizius, B., Groenen, M.A.M., Amigues, Y., Boscher, M.-Y., Russell, G., Law, A., Davoli, R., Russo, V., Désautés, C., Alderson, L., Fimland, E., Bagga, M., Delgado, J.V., Vega-Pla, J.L., Martinez, A.M., Ramos, M., Glodek, P., Meyer, J.N., Gandini, G., Matassino, D., Siggens, K.., Laval, G., Archibald, A., Milan D., Hammond, K., Cardellino, R., Haley, C. and Plastow, G., 2006. Genetic diversity in European pigs utilizing amplified fragment length polymorphism markers. Animal Genetics 37, 232-238.
  36. SanCristobal, M., Chevalet, C., Haley, C.S., Joosten, R., Rattink, A.P., Harlizius, B., Groenen, M.A.M., Amigues, Y., Boscher, M.-Y., Russell, G., Law, A., Davoli, R., Russo, V., Désautés, C., Alderson, L., Fimland, E., Bagga, M., Delgado, J.V., Vega-Pla, J.L., Martinez, A.M., Ramos, M., Glodek, P., Meyer, J.N., Gandini, G.C., Matassino, D., Plastow, G.S., Siggens, K.W., Laval, G., Archibald, A.L., Milan D., Hammond, K., Cardellino, R., Foulley, J.-L. and Ollivier, L., 2006. Genetic diversity within and between European pig breeds using microsatellite markers. Animal Genetics 37, 189-198.
  37. Ollivier, L., Alderson, L., Gandini, G.C., Foulley, J.-L., Haley, C.S., Joosten, R., Rattink, A.P., Harlizius, B., Groenen, M.A.M., Amigues, Y., Boscher, M.-Y., Russell, G., Law, A., Davoli, R., Russo, V., Matassino, D., Désautés, C., Fimland, E., Bagga, M., Delgado, J.-V., Vega-Pla, J.L., Martinez, A.M., Ramos, A.M., Glodek, P., Meyer, J.-N., Plastow, G.S., Siggens, K.W., Archibald, A.L., Milan, D., San Cristobal, M., Laval, G., Hammond, K., Cardellino, R., and Chevalet, C., 2005. An assessment of European pig diversity using molecular markers: Partitioning of diversity among breeds. Conservation Genetics 6, 729-741.
  38. Skinner, T.M., Doran, E., McGivan, J. D., Haley, C. S. and Archibald, A.L., 2005. Cloning and mapping of the porcine CYP2E1 gene and its association with skatole levels in the domestic pig. Animal Genetics 36, 417-422.
  39. Houston, R.D., Haley, C.S., Archibald, A.L. and Rance, K.A., 2005. A QTL affecting feed intake maps to chromosome 2 in pigs. Mammalian Genome 16, 464-470.
  40. Schook, L.B., Beever, J.E., Rogers, J., Humphray, S., Archibald. A., Chardon, P., Milan, D., Rohrer, G. and Eversole, K., 2005. Swine Genome Sequencing Consortium (SGSC): a strategic roadmap for sequencing the pig genome. Comparative and Functional Genomics 6, 251-255.
  41. Cui, Z., Zharikov, S., Xia, S.-L., Anderson, S.I., Law, A.S., Archibald, A.L. and Block, E.R., 2005. Molecular cloning, characterization and chromosomal assignment of porcine cationic amino acid transporter-1. Genomics 85, 352-359.
  42. Lee, G.J., Archibald, A.L., Law, A.S., Lloyd, S., Wood, J. and Haley, C.S., 2005. Detection of quantitative trait loci for androstenone, skatole and boar taint in a cross between Large White and Meishan pigs. Animal Genetics 36, 14-22.
  43. Jiang, Z., Zhu, W., Xu, S., Chen, J., Huang, R., Liu, H., Archibald, A.L. and Haley, C.S., 2005. Molecular germ-plasm characteristics of Taihu pigs. Journal of Nanjing Agricultural University 28, 69-74.
  44. Moller, M., Berg, F., Riquet, J., Pomp, D., Archibald, A., Anderson, S., Feve, K., Zhang, Y., Rothschild, M., Milan, D., Andersson, L. and Tuggle, C. K., 2004. High-resolution comparative mapping across pig chromosome 4 (SSC4), emphasizing the FAT1 region. Mammalian Genome 15, 717-731.
  45. Jørgensen, C.B., Cirera, S., Anderson, S.I., Archibald, A.L., Raudsepp, T., Chowdhary, B., Edfors-Lilja, I., Andersson, L. and Fredholm, M., 2003. Linkage and comparative mapping of the genomic segments responsible for susceptibility towards E. coli F4ab/ac diarrhoea in pigs. Cytogenetics and Genome Research 102, 157-162.
  46. Van Laere, A-S., Nguyen, M., Braunschweig, M., Nezer, C., Collette, C., Moreau, L., Archibald, A.L., Haley, C.S., Andersson, G., Georges, M. and Andersson, L., 2003. Positional identification of a regulatory mutation in IGF2 causing a major QTL effect on muscle development in the pig. Nature 425, 832-836.
  47. Russell, G.A., Archibald, A.L., Haley, C.S. and Law, A.S., 2003. The pig genetic diversity database and the WWW. Archivos de Zootecnia 52, 165-172.
  48. Carrion, D., Day, A., Evans, G., Mitsuhashi, T., Archibald, A., Haley, C., Andersson, L. and Plastow, G., 2003. The use of MC1R and KIT genotypes for breed characterisation. Archivos de Zootecnia 52, 237-244.
  49. King, A.H., Jiang, Z., Gibson, J.P., Haley, C.S. and Archibald, A.L., 2003. Mapping quantitative trait loci (QTL) affecting female reproductive traits on porcine chromosome 8. Biology of Reproduction 68, 2172-2179.
  50. Lee, G.J., Archibald, A.L., Garth, G.B., Law, A.S., Nicholson, D., Barr, A. and Haley, C.S., 2003. Detection of quantitative trait loci for locomotion and osteochondrosis-related traits in Large White x Meishan pigs. Animal Science 76, 155-165.
  51. Gibson, J.P., Jiang, Z.H., Archibald, A.L. and Haley, C.S., 2002. No detectable association of the ESR PvuII mutation with sow productivity in a Meishan x Large White F2 population. Animal Genetics 33, 448-450.
  52. Giuffra, E., Törnsten, A., Marklund, S., Bongcam-Rudloff, E., Chardon, P., Kijas, J.M.H., Anderson, S.I., Archibald, A.L. and Andersson, L., 2002. A large duplication associated with dominant white color in pigs originated by homologous recombination between two LINE elements flanking KIT. Mammalian Genome 13, 569-577.
  53. Brown, J.F. and Archibald, A.L., 2002. Physical and genetic mapping of the porcine colipase gene (CLPS). Animal Genetics 33, 377.
  54. Lowden, S., Finlayson, H.A., Macdonald, A.A., Downing, A.C., Goodman, S.J., Leus, K., Kaspe, L., Wahyuni, E. and Archibald, A.L., 2002. Application of Sus scrofa microsatellite markers to wild suiformes: implications for population, conservation and evolutionary genetic studies. Conservation Genetics 3, 347-350.
  55. Stratil, A. Kubíčková, S., Archibald, A.L., Peelman, L.J., McClenaghan, M., Musilová, P., M. Van Poucke, M. and J. Rubeš, J., 2002. Assignment of the porcine GLUL gene to the distal end of chromosome 9q. Animal Genetics 33, 315-316.
  56. De Sousa, P.A., Dobrinsky, J.R., Zhu, J., Archibald, A.L., Ainslie, A., Bosma, W., Bowering, J., Bracken, J., Ferrier, P.M., Fletcher, J., Gasparrini, B., Hakness, L., Johnston, P., Ritchie, M., Ritchie, W.A., Travers, A., Albertini, D., Dinnyes, A., King, T.J. and Wilmut, I., 2002. Somatic cell nuclear transfer in the pig: control of pronuclear formation and integration with improved methods for activation and maintenance of pregnancy. Biology of Reproduction 66, 642-650.
  57. Skinner, T.M., Anderson, S.I., Lopez-Corrales, N.L., Lowden, S., Loudon, A.L., Haley, C.S. and Archibald, A.L. 2001. Genetic and physical mapping, expression analysis and partial sequence of porcine PER1. Cytogenetics and Cell Genetics 95, 82-84.
  58. Sun, Y.M., da Costa, N., Birrell, R., Archibald, A.L., Alzuherri, H. and Chang, K.C., 2001. Molecular and quantitative characterisation of the porcine embryonic myosin heavy chain gene. Journal of Muscle Research and Cell Motility 22, 317-327.
  59. George, S., Springbett, A., Clark, A.J. and Archibald, A.L., 2001. Non-coordinate expression of closely linked mouse casein genes. Indian Journal of Biochemistry and Biophysics 38, 393-398.
  60. Jiang, Z., Gibson, J.P., Archibald, A.L. and Haley, C.S., 2001. The porcine gonadotropin-releasing hormone receptor gene (GNRHR): genomic organization, polymorphisms and association with the number of corpora lutea. Genome 44, 7-12.
  61. Hu, J., Mungall, C., Law, A., Papworth, R., Nelson, J.P., Brown, A., Simpson, I., Leckie, S., Burt, D.W., Hillyard, A.L. and Archibald, A.L. 2001. The ARKdb – genome databases for farmed and other animals. Nucleic Acids Research 29, 106-110.
  62. Calvo, J.H., Robic, A., Lopez-Corrales, N.L., Anderson, S.I., Zaragoza, P., Archibald, A.L. and Osta, R., 2000. Assignment of ppk98 (TRA1) to pig chromosome 5 by fluorescent in situ hybridisation and confirmation by somatic cell hybrid panel. Cytogenetics and Cell Genetics 90, 321-322.
  63. Calvo, J.H., Osta, R., Lopez-Corrales, N.L., Skinner, T.M., Anderson, S.I., Rodellar, C., Zaragoza, P. and Archibald, A.L., 2000. Assignment of maltase glucoamylase (MGAM) to pig chromosome 2 (2q21) by fluorescence in situ hybridisation and confirmation by genetic mapping. Cytogenetics and Cell Genetics 90, 236-237.
  64. Calvo, J.H., Lopez-Corrales, N.L., Anderson, S.I., Skinner, T.M., Marcos, S., Osta, R., Archibald, A.L. and Zaragoza, P., 2000. Assignment of acetyl- coenzyme A carboxylase α (ACACA) to pig chromosome 12 (12p12-p13) by fluorescence in situ hybridisation and confirmation by genetic mapping. Cytogenetics and Cell Genetics 90, 238-239.
  65. Skinner, T.M. Lopez, N.L., Anderson, S.I., A.L. Loudon, A.L., Haley, C.S. and Archibald, A.L., 2000. Genetic and physical mapping of the porcine melatonin receptor 1B gene (MTNR1B) to chromosome 9. Cytogenetics and Cell Genetics 90, 53-55.
  66. Anderson, S.I., Lopez-Corrales, N.L., Gorick, B. and Archibald, A.L., 2000. A large fragment porcine genomic library resource in a BAC vector. Mammalian Genome 11, 811-814.
  67. Walling, G.A., Visscher, P.M., Anderson, L., Rothschild, M.F., Wang, L., Moser, G., Groenen, M.A.M., Bidanel, J-P. Cepica, S., Archibald, A.L., Geldermann, H., de Koning, D.J., Milan, D. and Haley, C.S., 2000. Combined analyses of data from quantitative trait loci mapping studies: Chromosome 4 effects on porcine growth and fatness. Genetics 155, 1369-1378.
  68. Law, A.S. and Archibald, A.L., 2000. Farm animal genome databases. Briefings in Bioinformatics 1, 151-160.
  69. van Eijk, M., Haagsman H.P., Skinner, T., Archibald, A., Reid K.B., Lawson, P.R., 2000. Porcine lung surfactant protein D: complementary DNA cloning, chromosomal localization, and tissue distribution. Journal of Immunology 164, 1442-1450.
  70. Walling, G.A., Archibald, A.L., Cattermole, J.A., Downing, A.C., Finlayson, H.A., Nicholson, D., Visscher, P.M., Walker, C.A. and Haley, C.S., 1998. Mapping of quantitative trait loci on porcine chromosome 4. Animal Genetics 29, 415-424.
  71. Archibald, A.L., Couperwhite, S. and Buchman, T.G., 1998. RFLP and linkage analysis of the porcine fibrinogen loci - FGA, FGB and FGG. Animal Genetics 29, 471-472.
  72. Hu, J., Mungall, C., Nicholson, D. and Archibald, A.L., 1998. Design and implementation of a CORBA-based gene mapping system prototype. Bioinformatics 14, 112-120.
  73. McQueen, H.A., Clark, V.H., Bird, A.P., Yerle, M. and Archibald, A.L., 1997. CpG islands of the pig. Genome Research 7, 924-931.
  74. Rohrer, G.A., Alexander, L.J., Beattie, C.W., Wilke, P., Flickinger, G.H., Schook, L.B., Paszek, A.A., Andersson, L., Mariani, P., Marklund, L., Fredholm, M., Høyheim, B., Archibald, A.L., Nielsen, V.H., Milan, D. and Groenen, M.A.M., 1997. A consensus linkage map for swine chromosome 7. Animal Genetics 28, 223-229.
  75. George, S., Clark, A.J., and Archibald, A.L., 1997. Physical mapping of the murine casein locus reveals the gene order as α-β-γ-ε-κ. DNA and Cell Biology 16, 477-484.
  76. Archibald, A.L., Couperwhite, S. and Jiang, Z.H., 1996. The porcine TTR locus maps to chromosome 6q. Animal Genetics 27, 351-353.
  77. Hu, J., Nicholson, D., Mungall, C., Hillyard, A.L. and Archibald, A L., 1996. WebinTool: A generic Web to database interface building tool. Proceedings of the 7th International Conference and Workshop on Database and Expert Systems (DEXA 96), Zurich, September 9-13, 1996, Publisher: Los Alamitos, CA: IEEE Computer Society Press, pp 285-290.
  78. Archibald, A.L., Couperwhite, S., Mellink, C.H.M., Lahbib-Mansais, Y. and Gellin, J., 1996. Porcine alpha-1-antitrypsin (PI): cDNA cloning and gene mapping. Animal Genetics 27, 85-89.
  79. Rettenberger, G., Bruch, J., Fries, R., Archibald, A.L., and Hameister, H., 1996. Assignment of 19 porcine type I loci by somatic cell hybrid analysis detects new regions of conserved synteny between human and pig. Mammalian Genome 7, 275-279.
  80. McQueen, H.A., Fantes, J., Cross, S.H., Clark, V.H., Archibald, A.L. and Bird, A.P., 1996. CpG islands of chicken are concentrated on microchromosomes. Nature Genetics 12, 321-324.
  81. Paszek, A.A., Schook, L.B., Louis, C.F., Mickelson, J.R., Flickinger, G.H., Murtaugh, J., Mendiola, J.R., Janzen, M.A., Beattie, C.W., Rohrer, G.A., Alexander, L.J., Andersson, L., Ellegren, H., Johansson, M., Mariani, P., Marklund, L., Bøyheim, B., Davies, W., Fredholm, M., Archibald, A.L. and Haley, C.S., 1995. First International Workshop on Porcine Chromosome 6. Animal Genetics 26, 377-401.
  82. McQueen, H.A., Haley, C.S., Couperwhite, S. and Archibald, A.L., 1995. A linkage map of pig chromosome 10. Journal of Heredity 86, 228-230.
  83. Brown, J. F. and Archibald, A.L., 1995. Two porcine polymorphic microsatellite loci (S0033 and S0035). Animal Genetics 26, 277.
  84. Couperwhite, S., Buchman, T.G. and Archibald, A.L., 1995. A HindIII RFLP at the porcine inter-α-trypsin inhibitor locus (ITIH). Animal Genetics 26, 134.
  85. Couperwhite, S., Hemmings, B.A., and Archibald, A.L., 1995. RFLPs at the porcine locus encoding the type I alpha regulatory subunit of the cAMP-dependent protein kinase (PRKAR1A). Animal Genetics 26, 134.
  86. Archibald, A.L., Haley, C.S., Brown, J.F., Couperwhite, S., McQueen, H.A., Nicholson, D., Coppieters, W., Van de Weghe, A., Stratil, A., Winterø. A.K., Fredholm, M., Larsen, N.J., Nielsen, V.H., Milan, D., Woloszyn, Robic, A., Dalens, M., Riquet, J., Gellin, J., Caritez, J.-C, Burgaud, G., Ollivier, L., Bidanel, J-P., Vaiman, M., Renard, C., Geldermann, H., Davoli, R., Ruyter, D., Verstege, E.J.M., Groenen, M.A.M., Davies, W, Høyheim, B., Keiserud, A., Andersson, L., Ellegren, H., Johansson, M., Marklund, L., Miller, J.R., Anderson Dear, D.V., Signer, E., Jeffreys, A.J., Moran, C., Le Tissier, P., Muladno, Rothschild, M.F., Tuggle, C.K., Vaske, D., Helm, J., Liu, H.-C., Rahman, A., Yu, T.-P., Larson, R.G. and Schmitz, C.B., 1995. The PiGMaP consortium linkage map of the pig (Sus scrofa). Mammalian Genome 6, 157-175.
  87. Couperwhite, S. and Archibald, A.L., 1994. An XbaI RFLP at the porcine gelsolin locus (GSN). Animal Genetics 25, 368.
  88. Brown, J.F., Hardge, T., Rettenberger, G. and Archibald, A.L., 1994. Four new porcine polymorphic microsatellite loci (S0032, S0034, S0036 & S0037). Animal Genetics 25, 365.
  89. Archibald, A.L., Couperwhite, S., Haley, C.S., Beattie, C.W. and Alexander, L.J., 1994. RFLP and linkage analysis of the porcine casein loci - CASAS1, CASAS2, CASB and CASK. Animal Genetics 25, 349-351.
  90. Couperwhite, S. and Archibald, A.L., 1994. An EcoRI RFLP at the porcine endothelin-1 locus (EDN1). Animal Genetics 25, 286.
  91. Couperwhite, S., Stone, R. T. and Archibald, A.L., 1994. A PstI RFLP at the porcine orosomucoid locus (ORM). Animal Genetics 25, 285.
  92. Davies, W., Høyheim, B., Chaput, B., Archibald, A.L. and Frelat, G., 1994. Characterization of microsatellites from flow-sorted chromosome 13. Mammalian Genome 5, 707-711.
  93. McQueen, H.A., Yerle, M. and Archibald, A.L., 1994. Anchorage of an unassigned linkage group to pig chromosome 10 with P1 clones. Mammalian Genome 5, 646-648.
  94. Couperwhite, S. and Archibald, A.L., 1993. An EcoRV RFLP at the porcine chromogranin A locus (CHGA). Animal Genetics 24, 331.
  95. Couperwhite, S. and Archibald, A.L., 1993. An XbaI RFLP at the porcine growth hormone receptor locus (GHR). Animal Genetics 24, 331.
  96. Fredholm, M., Winterø, A. K., Christensen, K., Kristensen, B., Nielsen, P. B., Davies, W. and Archibald, A.L., 1993. Characterization of twenty four porcine (dA-dC)n - (dT-dG)n microsatellites: genotyping of unrelated animals from four breeds and linkage studies. Mammalian Genome 5, 187-192.
  97. Andersson, L., Archibald, A.L., Gellin, J. and Schook, L.B., 1993. Report of the 1st Pig Gene Mapping Workshop (PGM1), 7th August 1992, Interlaken, Switzerland. Animal Genetics 24, 205-216.
  98. Haley, Chris, Brown Judy, McQueen Heather, Couperwhite Sandra and Archibald, Alan, 1993. The Pig Gene Mapping Project (PiGMaP). Pig News and Information 14, 13N-16N.
  99. Brown, J.F. and Archibald, A.L.,1993. A porcine polymorphic microsatellite locus (S0031). Animal Genetics 24, 70.
  100. Clark, A.J., Archibald, A.L., McClenaghan, M., Simons, J.P., Wallace, R. and Whitelaw, C.B.A., 1993. Enhancing the efficiency of transgene expression. Proceedings of the Royal Society Meeting 'Transgenic modifications of germline and somatic cells: examples from animals and plants', 1-2 July, 1992. (edited by Flavell, R.B. and Heap, R.B.) Philosophical Transactions of the Royal Society of London, B vol 339, 225-232. (also published as a book by Chapman and Hall)
  101. Miller, J.R. and Archibald, A.L., 1993. 5' and 3' SINE-PCR allows genetic mapping of interbreed pig families without cloning and sequencing. Mammalian Genome 4, 243-246.
  102. Couperwhite, Sandra, Kato, Yukio and Archibald, Alan L., 1992. A TaqI RFLP at the porcine thyroid stimulating hormone β-subunit locus (TSHB). Animal Genetics 23, 567.
  103. Couperwhite, Sandra, Hemmings, Brian A. and Archibald, Alan L., 1992. A Bam HI RFLP at the locus encoding the 65 kDa regulatory subunit of porcine protein phosphatase 2A (PPP2ARB). Animal Genetics 23, 568.
  104. McClenaghan, M., Archibald, A.L., Harris, S., Simons, J.P., Whitelaw, C.B.A., Wilmut, I. and Clark, A.J., 1991. Production of human α1-antitrypsin in the milk of transgenic sheep and mice: targeting expression of cDNA sequences to the mammary gland. Animal Biotechnology 2, 161-176.
  105. Whitelaw, C. Bruce A., Archibald, Alan L., Harris, Stephen, McClenaghan, Margaret, Simons, J. Paul, and Clark, A. John, 1991. Targeting expression to the mammary gland: intronic sequences can enhance the efficiency of gene expression in transgenic mice. Transgenic Research 1, 3-13.
  106. Otsu, K., Khanna, V.K., Archibald, A.L. and MacLennan, D.H., 1991. Co-segregation in F1 generation backcrosses of porcine malignant hyperthermia and a probable causal mutation in the skeletal muscle ryanodine receptor gene. Genomics 11, 744-750.
  107. Whitelaw, C. Bruce A., Archibald, Alan L., Harris, Stephen, McClenaghan, Maggie, Springbett, Anthea, Simons, J. Paul, Wallace, Roberta and Clark, A. John, 1990. Frequency of germline mosaicism in founder transgenic mice. Mouse Genome 88, 114.
  108. Yerle, M., Archibald, A.L., Dalens, M. and Gellin, J., 1990. Localization of PGD and TGFβ-1 to pig chromosome 6q. Animal Genetics 21, 411-417.
  109. Archibald, A.L., McClenaghan, M., Hornsey, V., Simons, J.P. and Clark, A.J., 1990. High-level expression of biologically active human α1-antitrypsin in the milk of transgenic mice. Proceedings of the National Academy of Sciences USA 87, 5178-5182.
  110. Archibald, A.L. and Cowper, A.E., 1990. Two TaqI RFLPs at the porcine pancreatic phospholipase A2 locus (PPLA2). Animal Genetics 21, 93.
  111. Harris, S., Ali, S., Anderson, S., Archibald, A.L. and Clark, A.J., 1988. Complete nucleotide sequence of the genomic ovine β-lactoglobulin gene. Nucleic Acids Research 16, 10379-10380.
  112. Archibald, A.L. and McTeir, B.L., 1988. A new allele at the PGD locus in pigs. Animal Genetics 19, 189-191.
  113. Simons, J.P., Wilmut, I., Clark, A.J., Archibald, A.L., Bishop, J.O. and Lathe R., 1988. Gene transfer into sheep. Bio/Technology 6, 179-183.
  114. Archibald, A.L., 1987. Comparison of the serum amylases of farm animals. Comparative Biochemistry and Physiology 88B, 963-968.
  115. Archibald, A.L. and Webster, J., 1986. A new transferrin allele in sheep. Animal Genetics 17, 191-194.
  116. Archibald, A.L., Thompson, N.A. and Kvist, S., 1986. A single nucleotide difference at the 3' end of an intron causes differential splicing of two histocompatibility genes. The EMBO Journal 5, 957-965.
  117. Arnold, B., Burgert, H.-G., Archibald, A.L. and Kvist, S., 1984. Complete nucleotide sequence of the murine H-2 Kk gene. Comparison of three H-2 K locus alleles. Nucleic Acids Research 12, 9473-9487.
  118. McCoubrey, C.M., Sales, D.I. and Archibald, A.L., 1983. Testing genetic models in populations, which contain pedigree errors. Animal Blood Groups and Biochemical Genetics 14, 257-268.
  119. Archibald, A.L., 1982. Further studies on bovine serum amylase. 3. Affinity chromatography. Animal Blood Groups and Biochemical Genetics 13, 71-80.
  120. Archibald, A.L., 1981. Further studies on bovine serum amylase. 2. Affinity electrophoresis. Animal Blood Groups and Biochemical Genetics 12, 249-264.
  121. Jarvis, S.M., Young, J.D., Ansay, M., Archibald, A.L., Simmonds, R.J. and Harkness, R.A., 1980. Is inosine the physiological energy source of pig erythrocytes? Biochimica et Biophysica Acta 597, 183-188.
  122. Archibald, A.L., Bradley, J.S. and Spooner, R.L., 1979. Evidence for phenotypic change at the Amylase I locus in cattle - an explanation of the apparent heterozygote excess. Animal Production 28, 337-345.
  123. Archibald, A.L. and Spooner, R.L., 1978. Further studies on bovine serum amylase - the effect of gel buffer pH. Animal Blood Groups and Biochemical Genetics 9, 229-238.

Refereed - review papers, conference papers

  1. Hume, D.A., Whitelaw, C.B.A. and Archibald, A.L., in press. The future of animal production – improving productivity and sustainability. The Journal of Agricultural Science in press.
  2. de Koning, D.-J, Archibald A. and Haley, C.S., 2007. Livestock genomics: bridging the gap between mice and men. Trends in Biotechnology 25, 483-489.
  3. Lewis, C.R.G., Ait-Ali, T., Clapperton, M., Archibald, A.L. and Bishop, S.C., 2007. Genetic perspectives on host responses to Porcine Reproductive and Respiratory Syndrome (PRRS). Viral Immmunology 20, 343-358.
  4. Archibald, A.L. and Haley, C.S., 2003. What can the genetics revolution offer the meat industry? Outlook in Agriculture 32, 219-226.
  5. Archibald, A.L. and Haley, C.S., 1998. Pig genome mapping – a beginning. Journal of the Royal Agricultural Society of England 159, 107-119.
  6. Mohrenweiser, H., Olsen, A., Archibald, A., Beattie, C., Burmeister, M., Lamerdin, J., Lennon, G., Stewart, B., Stubbs, L., Weber, J.L. and Johnson, K., 1996. Report of the third international workshop on human chromosome 19 (1996). Cytogenetics and Cell Genetics 74, 162-181.
  7. Andersson, L., Archibald, A., Ashburner, M., Audun, S., Barendse, W., Bitgood, J., Bottema, C., Broad, T., Brown, S., Burt, D., Charlier, C., Copeland, N., Davis, S., Davisson, M., Edwards, J., Eggen, A., Elgar, G., Eppig, J.T., Franklin, I., Grewe, P., Gill III, T., Graves, J.A.M., Hawken, R., Hetzel, J., Hillyard, A., Jacob, H., Jaswinska, L., Jenkins, N., Kunz, H., Levan, G., Lie, O., Lyons, L., Maccarone, P., Mellersh, C., Montgomery, G., Moore, S., Moran, C., Morizot, D., Neff, M., Nicholas, F., O’Brien, S., Parsons, Y., Peters, J., Postlewait, J., Raymond, M., Rothschild, M., Schook, L., Sugimoto, Y., Szpirer, C., Tate, M., Taylor, J., VandeBerg, J., Wakefield, M., Wienberg, J. and Womack, J., 1996. Comparative genome organisation of vertebrates. Mammalian Genome 7, 717-734.
  8. Archibald, A.L., 1994. From mapping to manipulating the vertebrate genome. In: International Conference on Comparative Gene mapping in Terrestrial and Aquatic Vertebrates, Oslo, Norway, February 7 - 11, 1994. Animal Biotechnology 5, 233-242.
  9. Archibald, A.L., 1994. Fat pigs can blame their genes. Current Biology 4, 728-730.
  10. Archibald, A.L., 1994. Mapping of the pig genome. Current Opinion in Genetics and Development 4, 395-400.
  11. Wilmut, I., Archibald, A.L., McClenaghan, M., Simons, J.P., Whitelaw, C.B.A. and Clark, A.J., 1991. Production of pharmaceutical proteins in milk. Experientia 47, 905-912.
  12. Clark, A.J., Archibald, A.L., McClenaghan, M., Simons, J.P., Whitelaw, C.B.A., and Wilmut, I., 1990. The germline manipulation of livestock: progress during the past five years. Proceedings of the New Zealand Society of Animal Production 50, 167-179.
  13. Wilmut, I., Archibald, A.L., Harris, S., McClenaghan, M., Simons, J.P., Whitelaw, C.B.A. and Clark, A.J., 1990. Methods of gene transfer and their potential use to modify milk composition. (Proceedings of 1990 Annual Conference of the International Embryo Transfer Society) Theriogenology 33, 113-123.
  14. Archibald, A.L. and Imlah, P., 1985. The halothane sensitivity locus and its linkage relationships. Animal Blood Groups and Biochemical Genetics 16, 253-263.

Book chapters

  1. Groenen, M.A.M., Schook, L.B. and Archibald, A.L., 2011. Pig genomics. In: The Genetics of the pig, 2nd Edition (editors: Rothschild, M. F. and Ruvinsky, A.), CAB International, pp179-199.
  2. Haley, C.S. and Archibald, A.L., 2004. Livestock – genomics and productivity. In: Yields of Farmed Species: Constraints and opportunities in the 21st century. Edited by Wiseman, J. and Sylvester-Bradley, R., Nottingham: Nottingham University Press, pp417-434.
  3. Haley, C.S. and Archibald, A.L., 2003. Prospects in pig genetics. In: “Perspectives in pig science”, Edited by Wiseman, J., Baskemp, B. and Varley, M., Nottingham University Press.
  4. Kathirvel, P. and Archibald, A.L., 2001. The halothane gene and leanness and stress susceptibility in pigs. In: Animal models – disorders of eating behaviour and body composition. Edited by J.B. Owen, J.L. Treasure and D.A. Collier. Kluwer Academic Publishers. pp173-190.
  5. Archibald, A.L., 1998. Comparative genome mapping - the livestock perspective. In: New Technologies in Animal Breeding. Modern Genetics Book Series. Edited by Lathe, R. OPA Overseas Publishing Associates (UK) Ltd. pp 137-164.
  6. Archibald, A.L. and Haley, C.S., 1998. Genetic linkage maps. In: Genetics of the pig, Edited by Rothschild, M. F. and Ruvinsky, A., CAB International, Wallingford, UK., ISBN 0 85199 229 3, pp265-294.
  7. Haley, C.S. and Archibald, A.L., 1998. Progress in pig gene mapping. In: Progress in pig science. Edited by Wiseman, J., Varley, M.A. and Chadwich, J.P., Nottingham University Press, ISBN 1-897676-26-3, pp 5-27.
  8. Graves, J.A.M., Wakefield, M.J., Peter, J., Searle, A.J., Archibald, A., O’Brien, S.J. and Womack, J.E., 1996. Report of the committee on comparative mapping. In: Human Gene Mapping 1995, A compendium. (compiled by A. Jamie Cuticchia, Michael A. Chipperfield and Patricia A. Foster with the assistance of the staff of the Genome Data Base), The John Hopkins University Press, ISBN 0-8018-5343-5, ISSN 1074-5505. pp1351-1408.
  9. Echard, G., Yerle, M., Milan, D., Gellin, J. and Archibald, A.L., 1993. The gene map of the pig (Sus scrofa domestica L.) 2N = 38. Genetic Maps, Sixth Edition, Edited by S. J. O'Brien, published by Cold Spring Harbor Laboratory Press, Plainview, NY, pp 4.240-4.249.
  10. Haley, C.S. and Archibald, A.L., 1992. Pig gene identification - review. In: Pork quality: genetic and metabolic factors. Proceedings of the Organisation for Economic Co-operation and Development Seminar on Meat Quality, Helsinki, Finland, 8-10 June 1992 (edited by Puolanne, E., Demeyer, D.I., Ruusunen, M. and Ellis, S). Published by CAB International, pp 37-57.
  11. Haley, Chris S. and Archibald Alan L., 1992. Porcine genome analysis. In: “Genome Analysis” (edited by Kay E. Davies and Shirley M. Tilghman) published by Cold Spring Harbor Laboratory Press, pp99-129.
  12. Simons, J.P., Ali, S., Archibald, A.L., Brown, P., Harris, S., McClenaghan, M., Whitelaw, C.B.A., Wilmut, I. and Clark, A.J., 1993. Genetic manipulation in livestock improvement. In: "Animal health and production in the 21st Century”, (edited by Beh, K.J.), published by CSIRO Publications, East Melbourne, pp 15-25.
  13. Archibald, A.L., 1991. Molecular biological approaches and their possible applications. In: “Breeding for disease resistance in farm animals,” (editors J.B. Owen & R.F.E. Axford) published by the CAB International, pp 100-122.
  14. Archibald, A.L., 1991. Halothane-induced malignant hyperthermia in pigs. In: “Breeding for disease resistance in farm animals” (editors J.B. Owen & R.F.E. Axford) published by the CAB International, pp 449-466.
  15. Wilmut, I., Archibald, A., Harris, S., McClenaghan, M., Simons, P., Whitelaw, B. and Clark, J. 1990. Modification of milk composition. In: “Genetic Engineering of Animals”, Proceedings of the Second Symposium on Genetic Engineering of Animals, held at Cornell University, U.S.A., June, 1989. (Edited by W. Hansel and B. J. Weir), Journal of Reproduction and Fertility Supplement 41, 135-146.
  16. Archibald, Alan L., 1989. Transgene landbouwhuisdieren [Transgenic livestock]. In: “Biotechnologie in de veehouderij [Biotechnology in Animal Production]” Redactie: E. Egberts, T. van der Lende, A.J. van der Zijpp, published by Pudoc, Wageningen, The Netherlands. ISBN 90-220-1024-4, pp 132-143 (bibliography: pp161-172).
  17. Lathe, R., Clark, A.J., Archibald, A.L., Bishop, J.O., Simons, P. and Wilmut, I., 1986. Novel products from livestock. In "Exploiting new technologies in animal breeding - Genetic developments", Eds. C. Smith, J.W.B. King and J.C. McKay. pp91-102.

Patents

  1. Jørgensen, C.B., Cirera, S., Archibald, A.L., Andersson, L., Fredholm, M. and Edfors-Lilja, I., 2003. Porcine polymorphisms and methods for detecting them. International Patent Application WO2004048606, Patent ref: PCT/DK2003/000807, Priority date: 25 November 2002 from Danish application PA2002018119 and US application 60/428738.
  2. Haley, C.S. and Archibald, A.L., 2001. Assay. International application no: PCT/GB 01/00448.
  3. Archibald, A.L., Clark, A.J., Harris, S., McClenaghan, M., Simons, J.P. and Whitelaw, C.B.A., 1992. A genetic construct of which protein-coding DNA comprises introns and is designed for protein production in transgenic animals. Australian Patent AU62810, GB882446. U.K. Patent Application no. 882446.
  4. Archibald, A.L., Clark, A.J., Harris, S., McClenaghan, M., Simons, J.P. and Whitelaw, C.B.A., 1992. A genetic construct of which protein-coding DNA comprises introns and is designed for protein production in transgenic animals. UK Patent application GB882446. EPO application EP89912273 PCT application WO9005188.
  5. Archibald, A.L., Clark, A.J., Harris, S., McClenaghan, M., Simons, J.P. and Whitelaw, C.B.A., 1988. Transgenic constructs with some (but not all) introns. U.K. Patent Application no. 882446.

Conference papers - full papers

  1. Ait-Ali, A., Wilson, A.D., Westcott, W.G., Frossard, J.-P., Mellencamp, M.A., Drew, T.W., Bishop, S.C. and Archibald, A.L., 2008. Dynamic differential regulation of innate immune transcripts during the infection of alveolar macrophages by the Porcine Reproductive and Respiratory Syndrome virus. In: Animal Genomics for Animal Health, Paris, France 25-27 October 2007. Volume editors: Pinard, M.-H., Gay, C., Pastoret, P.-P. and Dodet, B. Developments in Biologicals 132, 239-245.
  2. Ait-Ali, T., Wilson, A., Westcott, D., Frossard, J-P., Carré, W., Mouzaki, D., Waddington, D., Waterfall, M., Clapperton, M., Mellencamp, M., Drew, T.W., Bishop, S. and Archibald, A. 2008. Transcriptional innate immune response to PRRSV in macrophages. In: EuroPRRSnet workshop: Combating PRRS in Europe, Brussels, 24-25 July 2008. p20.
  3. Kemp, S.J., Hanotte, O., Agaba, M., Noyes, H.A., Gibson, J., Archibald, A., Rennie, S., Hulme, H. and Brass, A., 2008. Genomics approaches to study the biology underlying resistance to Trypanosomiasis – some unexpected lessons. In: Animal Genomics for Animal Health, Paris, France 25-27 October 2007. Volume editors: Pinard, M.-H., Gay, C., Pastoret, P.-P. and Dodet, B. Developments in Biologicals 132, 89-91.
  4. Ait-Ali, T., Wilson, A., Westcott, D., Frossard, J-P., Carré, W., Mouzaki, D., Waddington, D., Waterfall, M., Clapperton, M., Mellencamp, M., Drew, T.W., Bishop, S. and Archibald, A. 2007. Genome-wide transcriptional network of innate immune responses to replication of PRRSV in alveolar macrophages of commercial breeds. In: Proceedings of the 5th International Symposium on Emerging and Re-emerging Pig Diseases: PMWS, PRRS, swine influenza and associated diseases, Krakow, Poland, 24-27 June 2007, (ISBN 978-83-89946-06-05) p162.
  5. Lewis, C.R.G., Ait-Ali, T., Wilson, A., Westcott, D.G., Frossard, J.-P., Naidu, B., Mellencamp, M.A., Drew, T., Archibald, A. and Bishop, S.C., 2007. Host response to PRRS infection and opportunities to exploit host genetic variation. In: Proceedings of the 5th International Symposium on Emerging and Re-emerging Pig Diseases: PMWS, PRRS, swine influenza and associated diseases, Krakow, Poland, 24-27 June 2007, (ISBN 978-83-89946-06-05) p149.
  6. Wei, W., De Koning, D.J., Penman, J.C., Finlayson, H.A., Archibald, A.L. and Haley, C.S., 2006. Mapping quantitative trait loci for ear traits in pigs. In: 8th World Congress on Genetics Applied to Livestock Production, August 13th - 18th 2006, Belo Horizonte, Brazil pp 6-21.
  7. Jiang, Z., Robinson, J.A.B., Gibbons, A.M.V., Gibson, J.P., Archibald, A.L. and Haley, C.S., 2002. Mapping of QTLs for prolificacy traits on SSC8 using a candidate gene approach. In: Proceedings of the 7th World Congress on Genetics Applied to Livestock Production. Montpellier, August 19-23, 2002. Edited by Organising Committee Castanet-Tolosan, France: INRA, 30: 633-636 (Communication No. 08-02).
  8. Melville, J.S., Gibbins, A.M.V., Robinson, J. A.B., Gibson, J.P., Archibald, A.L., Haley, C.S. and Jiang, Z., 2002. A Meishan positive QTL for prolificacy traits found at the NCOA1 locus on SSC 3. In: Proceedings of the 7th World Congress on Genetics Applied to Livestock Production. Montpellier, August 19-23, 2002. Edited by Organising Committee Castanet-Tolosan, France: INRA, 30: 733-736 (Communication No. 08-26).
  9. SanCristobal, M., Chevalet, C., Haley, C.S., Russell, G., Plastow, G., Siggens, K., Bagga, M., Groenen, M.A.M., Amigues, Y., Hammond, K., Laval, G., Boscher, M.-Y., Milan, D., Law, A., Fimland, E., Davoli, R., Russo, V., Gandini, G., Archibald, A., Delgado, J.V., Ramos, M., Désautés, C., Alderson, L., Glodek, P., Meyer, J.-N., Foulley, J.-L. and Ollivier, L., 2002. Genetic diversity in pigs: preliminary results on 58 European breeds and lines. In: Proceedings of the 7th World Congress on Genetics Applied to Livestock Production. Montpellier, August 19-23, 2002. Edited by Organising Committee Castanet-Tolosan, France: INRA, (Communication No. 26-14).
  10. Archibald, A.L., 2001. The contribution of molecular and reproductive technologies to the conservation of animal genetic resources. In: Asia-Pacific Economic Cooperation 3rd Workshop on conservation and Utilization of Plant and Animal Genetic Resources, Taichung, Chinese Taipei, 31st October – 3rd November 2000. pp 121-140.
  11. Skinner, T. M., Lopez-Corrales, N. L., Anderson, S. I., Yerle, M. and Archibald, A.L., 1999. Physical mapping of porcine seasonality genes. Animal Biotechnology 10, 143-146.
  12. Lopez-Corrales, N.L., Mungall, C., McCarthy, L., McDowall, S., Goodfellow, P.N. and Archibald, A.L., 1999. A radiation hybrid map of pig chromosome 4. Proceedings of the 13th European Colloquium on Cytogenetics of Domestic Animals. Állattenyésztés Takarmányozás [Hungarian Journal of Animal Production] 48, 65-66.
  13. Archibald, A.L., 1999. Is functional genomics possible in farm animals? In: 50th Annual Meeting of the European Association for Animal Production, Zurich, Switzerland, 22-26 August 1999.
  14. Wales, R., Siggens, K., van Eijk, M., Brugmans, B., Peleman, J., Archibald, A., Haley, C, Andersson, L. and Plastow, G., 1999. AFLP: A multifunctional tool for the animal breed industry. In: Farm Animal Industrial Platform Meeting Proceedings, 5th-6th June, 1999 Utrecht, The Netherlands.
  15. Wales, R., Siggens, K.W., van Eijk, M.J.T., Brugmans, B., Archibald, A., Haley, C.S. and Plastow, G.S., 1999. Is a linkage map and a pedigree structure required to detect useful DNA markers (QTL) in the pig? Proceedings of the British Society of Animal Science, Annual meeting, Scarborough, 1999, Publisher: Penicuik: British Society of Animal Science,
  16. Walling, G.A., Archibald, A.L., Visscher, P.M. and Haley, C.S., 1998. Mapping genes for growth rate and fatness in a Large White x Meishan pig F2 population. Proceedings of the British Society of Animal Science, Annual meeting, Scarborough, 23-25 March 1998, Publisher: Penicuik: British Society of Animal Science, p7.
  17. Plastow, G.S., Kuiper, M., Wales, R., Archibald, A.L., Haley, C.S. and Siggens, K.W., 1998. AFLP mapping and QTL detection in commercial pigs. In: Proceedings of the 6th World Congress on Genetics Applied to Livestock Production, Armitage, NSW, Australia, 12-16 January, 1998 Vol 26, 209-212.
  18. Walling, G.A., Archibald, A.L., Visscher, P.M. and Haley, C.S., 1998. Mapping of quantitative trait loci on chromosome 4 in a Large White x Meishan pig F2 population. In: Proceedings of the 6th World Congress on Genetics Applied to Livestock Production, Armidale, NSW, Australia, 12-16 January, 1998 Vol 23, 519-522.
  19. Archibald, A.L. and Haley, C.S., 1997. PiGMaP - from mapping to applications. STAFF 1997 International Workshop on Animal Genome Analysis, STAFF-Institute, Tsukuba, Ibaraki, Japan, 11 -13 November 1997
  20. Keightley, P. D., Heath, S. C., Hardge, T., May, L., Archibald, A.L. and Bulfield, G., 1994. Changes of genetic variance and frequencies of marker alleles in mouse lines selected for 6 week weight. In: Proceedings of the 5th World Congress on Genetics Applied to Livestock Production, University of Guelph, Canada, 7 - 12 August, 1994. (edited by Smith, C., Gavora, J.S., Benkel, B., Chesnais, J., Fairfull, W., Gibson, J.P., Kennedy, B.W. and Burnside, E.B.). Published by the Organizing Committee, Guelph, Ontario, Vol. 19, 61- 66.
  21. Archibald, A.L., Burt, D.W. and Williams, J.L. 1994. Gene mapping in farm animals and birds: an overview. In: Proceedings of the 5th World Congress on Genetics Applied to Livestock Production, University of Guelph, Canada, 7 - 12 August, 1994. (edited by Smith, C., Gavora, J.S., Benkel, B., Chesnais, J., Fairfull, W., Gibson, J.P., Kennedy, B.W. and Burnside, E.B.). Published by the Organizing Committee, Guelph, Ontario, Vol. 21, 5 - 12.
  22. Haley, C.S. and Archibald, A.L., 1993. Current progress in the pig gene mapping project (PiGMaP). In: European Poultry Breeders Round Table Conference, Oxford, 30 June - 2 July, 1993. p 1-9.
  23. MacLennan, D.H., Otsu, K., Fujii, J., Zorzato, F., Phillips, M.S., O'Brien, P.J., Archibald, A.L., Britt, B.A., Gillard, E.F. and Worton, R.G., 1992. The role of the skeletal muscle ryanodine receptor gene in malignant hyperthermia. In: Molecular Biology of Muscle. (edited by el Haj, A.) Published by Company of Biologists Ltd., Cambridge. Symposia of the Society for Experimental Biology 46, 189-201.
  24. Haley, C.S. and Archibald, A.L., 1992. [The European pig gene mapping projecty (PiGMaP)]. Proyecto europeo sobre el mapa genetico porcino (PiGMaP). In: Simposio Internacional de Porcinocultura, Sepor ‘92, Lorca, Sapin Del 15 al 18 de Septiembre de 1992. Published by Conserjeria de Agricultura, Ganaderia y Pesca de la Region Murcia, Congresos 6, pp 169-176.
  25. Haley, C.S. and Archibald, A.L., 1992. Genetic mapping in Meishan x Large White crosses. In: proceedings of the International Symposium on Chinese Pig Breeds. Held at the Northeast Agricultural College, Harbin, China, 11-14 August, 1992. (edited by Runsheng, C.). Published by Northeast Forestry University Press, Harbin, China, pp 571-581.
  26. Clark, A.J., Archibald, A.L., McClenaghan, M., Simons, J.P., Whitelaw, C.B.A. and Wilmut, I., 1991. Targeting gene expression to the mammary gland. Australian Association of Animal Breeding and Genetics Conference: Molecular Biology and Milk Production, Ormond College, University of Melbourne, Australia, 22-29 June 1991, pp 146-147.
  27. Lister, David, Archibald, Alan L. and Flint, D.J., 1991. Biotechnology in meat production. In: "The European Meat Industry in the 1990’s: Advanced Technologies, Product Quality and Consumer Acceptability" edited by Frans J. M. Smulders - Utrecht, 1991, Audet Tijdschriftn B.V. 1-24.
  28. Wilmut, I., Wells, D.N., McWhir, J., Hooper, M.L., Ritchie, W.A., Whitelaw, C.B.A., Archibald, A.L., McClenaghan, M., Simons, J.P., and Clark, A.J., 1991. Advances in animal biotechnology: Embryo micromanipulation and gene transfer. In: 2nd Symposium on Molecular mechanisms underlying the maintenance of germ lines in animals and Man, Kyoto, Japan, 19th January 1991, pp16-20.
  29. Whitelaw, C. Bruce A., Archibald, Alan L., Harris, Stephen, McClenaghan, Simons, J. Paul, Margaret,Watson, Christine J., Wilmut, Ian. and Clark, A. John, 1990. Expression of b-lactoglobulin and hybrid transgenes in the mammary gland. Proceedings of Biotech USA 1990, November 27-29, 1990, Washington DC, USA, pp130-136. (ISBN 0-945449-09-7)
  30. Whitelaw, C.B.A., Archibald, A.L., Hitchin, F.E., McClenaghan, M., Simons, J.P., Watson, C.J., Wilmut, I. and Clark, A.J., 1990. The molecular manipulation of milk. Proceedings of the XLIV Congress of the Italian Veterinary Society, September 1990 pp 9.
  31. Simons, J.P., Ali, S., Archibald, A.L., Brown, P., Harris, S., McClenaghan, M., Whitelaw, C.B.A., Wilmut, I. and Clark, A.J., 1990. Modification of milk composition by gene transfer. 4th World Congress on Genetics Applied to Livestock Production XIV, 132-135.
  32. Haley, C.S., Archibald, A.L., Andersson, L., Bosma, A.A., Davies, W., Fredholm, M., Geldermann, H., Groenen, M., Gustavsson, I., Ollivier, L., Tucker, E.M., and Van de Weghe, A., 1990. The Pig Gene Mapping Project - PiGMaP. 4th World Congress on Genetics Applied to Livestock Production XIII, 67-70.
  33. Simons, J.P., Ali, S., Archibald, A.L., Brown, P., Harris, S., McClenaghan, M., Whitelaw, C.B.A., Wilmut, I. and Clark, A.J., 1990. Production of human protein by transgenic animals. Association for Veterinary Clinical Pharmacology and Therapeutics Winter Meeting.
  34. Archibald, A.L., Brown, P., Harris, S., McClenaghan, M., Simons, J.P., Whitelaw, C.B.A., Wilmut, I. and Clark, A.J., 1989. Novel milk by gene transfer. 40th Annual Meeting of the European Association for Animal Production, Dublin, 27-31 August, 1989. (circulated paper) [(Abstract) Volume 1, p153-4.]
  35. Archibald, A.L., 1989. Transgenesis - a way to new genomes. In: "Bioscience in animal production", 7th International Royal Show Symposium, 27 June - 3 July 1989, Monograph Series No. 9, Royal Agricultural Society of England. National Agriculture Centre, Stoneleigh, Warwickshire, England pp 51-59.
  36. Clark, A.J., Ali, S., Archibald, A.L., Bessos, H., Brown, P., Harris, S., McClenaghan, M., Prowse, C., Simons, J.P., Whitelaw, C.B.A. and Wilmut, I., 1989. Molecular manipulation of milk composition. XVIth International Congress of Genetics, August 20-27, 1988, Toronto, Canada. Genome 31, 950-955.
  37. Clark, A.J., Ali, S., Archibald, A.L., Brown, P., Harris, S., McClenaghan, M., Simons, J.P., Whitelaw, C.B.A. and Wilmut, I., 1988. Production of human proteins in the milk of transgenic mice and sheep. In: "Transgenesis from bacteria to man". Published by IBC Technical Services. St John's College, Cambridge 12-13 December 1988.
  38. Archibald, A.L., 1986. A molecular genetic approach to the porcine stress syndrome. Paper presented at the European Community Seminar on "Evaluation and control of meat quality in pigs", Dublin, November 21-22, 1985. In "Evaluation and control of meat quality in pigs", Eds. P.V. Tarrant, G. Eikelenboom and G. Monin. Martinus Nijhoff Publishers, Dordrecht. pp 343-357.